SRA file upload in NCBI (error in organism name options in attributes)

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4.1 years ago

MSRS ▴ 590

Hi,

I am trying to upload the metagenomic data (Fastq, Illumina paired-end read) file in SRA portal of NCBI. Sample type- active sludges of Biogas plant. My question is:- 1. Biosample type (Which one should I need to select?)

2.In Attributes, Organism option, What should I need to write?

Here, anything I wrote, the error message was:

Submission processing may be delayed due to necessary curator review. Please check spelling of organism, current information could not be resolved automatically and will require a taxonomy consult

Thanks in Advance.

NCBI SRA Uploading sequencing • 1.6k views

ADD COMMENT • link 4.1 years ago by MSRS ▴ 590

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That looks like a warning. Someone at NCBI support should get in touch with you to resolve the issue. I suggest you take a look at other metagenomic datasets in NCBI and see what people have entered for the fields you are asking about.

ADD REPLY • link 4.1 years ago by GenoMax 147k

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Thank you Genomax. Issued solved according to your instruction. details: https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=410657&lvl=3&keep=1&srchmode=1&unlock

ADD REPLY • link 4.1 years ago by MSRS ▴ 590

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