Databases for genome accessibility

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4.6 years ago

kimkes25 ▴ 50

Hello.

I am looking for dnase-seq resuls for certain cell types in narrow peak format.

I tried to find results on ENCODE and UCSC with no success.

Where else should I look for it? Do you know any other databaese online?

Thanks

dnase accessibility encode ucs • 966 views

ADD COMMENT • link updated 4.5 years ago by Biostar 20 • written 4.6 years ago by kimkes25 ▴ 50

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You asked quite a lot of question on this recently. May I ask what your ultimate goal is, maybe there is a better solution here. Does it really need to be DNase-seq? ATAC-seq is much more prominent these days. Please also follow-up on your recent questions, upvote and accept answers if helpful.

ADD REPLY • link 4.6 years ago by ATpoint 88k

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you are totally right. I just upvoted answers! Thank for the comment!

I fixed my post. also ataq-seq will be great! My goal is to find experiment results for a list of cells that has accessability scores for the genome. after I have that, I will check the correlation between open areas to crispers tendanct to cut them with a certain sgRNA

ADD REPLY • link 4.6 years ago by kimkes25 ▴ 50

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