I was just paroosing the NCBI FTP site looking for a good way to get a taxonomic tree based on taxID's when I stubled upon "Prodigal hack" in genomes ftp://ftp.ncbi.nlm.nih.gov/genomes/ProdigalHack/
Seemed a bit odd, might make a virtual machine and go for a poke around in some spare time at some point, but was wondering if anyone knew what it is to save me the time?
This https://github.com/hyattpd/Prodigal ?