Quick way of clearing out rs IDs from VCF?
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4.1 years ago
devenvyas ▴ 760

Anyone know of a quick way to clear SNP rs IDs from a VCF file?

I am trying to run TPBWT ( https://github.com/23andMe/phasedibd ). The rs IDs match between my VCF and my map file, but it keeps claiming that they don't match. Any suggestion on how to quickly flush them out from the VCF file?

VCF • 835 views
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Please define "clear SNP rs" and "flush them out"?

You can remove the ID with:

bcftools annotate -x ID
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