Question

NCBI Viral Genomes Resource

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4.1 years ago

yousefifariba6 • 0

I want to align the bee sequence on the virus reference and I need the virus reference and virus annotation information but I do not know how can I find the virus reference and annotation?

next-gen • 954 views

ADD COMMENT • link updated 4.1 years ago by Istvan Albert 101k • written 4.1 years ago by yousefifariba6 • 0

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Just google with "NCBI Viral Genomes Resource", check the first result.

ADD REPLY • link 4.1 years ago by shenwei356 8.7k

score 1 · Answer 1 · 2020-10-23

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4.1 years ago

Istvan Albert 101k

Try these tools:

NCBI Datasets:

https://www.ncbi.nlm.nih.gov/datasets/

or possibly:

https://github.com/kblin/ncbi-genome-download

ADD COMMENT • link 4.1 years ago by Istvan Albert 101k

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https://www.ncbi.nlm.nih.gov/genome/viruses/

With NCBI datasets the command line tool will need to be used to get at viral genomes. Web interface is only for Eukaryotes.

ADD REPLY • link 4.1 years ago by GenoMax 147k