Reference Consortium (HRC) in GRch38/hg38
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4.1 years ago
enho ▴ 60

Hi,

I am trying to phase a tumor variants using Eagle2/Shapeit4.

My sample coordinates are in Grch38/hg38, but the Haplotype Reference Consortium (HRC) coordinates are in GRch37/hg19.

I was wondering does anyone know if there is a hg38 version of HRC or what are the steps to liftover it's VCF file?

Thanks

haplotype reference genome • 1.3k views
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