Any suggestions for cultivar identification using SSR (simple sequence repeat) markers
0
0
Entering edit mode
4.1 years ago
xie186 ▴ 30

This is the data I have now: 30 SSR markers for 80 cultivars of cucumber. 10 of the 80 cultivars belong to one cultivar (let's say A).

My goal is that when a person hand me a new unknown cultivar I can tell the person whether it's A or not after I genotype the new cultivar using 30 SSR markers.

I'm think of considering it as a classification problem (A vs non-A) and use machine learning method to build a model using the SSR markers as features. But the problem is that A cultivars don't have enough number of samples.

Do you have any suggestions which statistical method(s) I can try to solve this problem? Thanks in advance.

ssr machinelearning marker • 606 views
ADD COMMENT

Login before adding your answer.

Traffic: 2344 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6