Visualizing alternative splicing events

Question

[Nelislam4]

Dears,

I have TPM read counts of RNA-seq data from Salmon, then I have used SUPPA2 for alternative splicing events detection. The point is, I need a tool to visualize the alternative splicing events across conditions? and what files should I consider for these visualization, TPM read counts or psi files from SUPPA2?

I really appreciate your help,

Nour

[husensofteng]

I would show the PSI values in boxplots per group as well as read coverages for individual events similar to the one depicted in this figure: Fig4.f

[Nelislam4]

Thanks for your response, actually the link requires login domain as certificate.

Did you means avg PSI values which is in .clustvec file?

Thanks, Nour

[husensofteng]

sorry that was through a proxy, the link should work now.