Entering edit mode
4.1 years ago
danvoronov
▴
30
I want to make a plot with Gviz for my bedgraph tracks, bed files and gff annotation.
I have this command for plotting bedgraph tracks:
bg1 <- DataTrack(
range = file,
name="gene", type = "histogram", fill.histogram = "magenta",
col.histogram = shade, window=-2, windowSize=2,
cex.axis=0.8,
rotation.title=1,
cex.title = 1,
ylim =c(0,10), genome ='species', min.distance= 5)
and then this one for plotting:
plotTracks(bg1,
from = start, to = end, background.title='white',
col.axis='black', col.title='black', add=add,
title.width = 0.9,
transformation = function(x) {x/median(x)},
main=paste0(capitalize(species), name), margin = 50, innerMargin = 20)
I cannot figure out how to make the height of the track shorter. I know there is the ylim =c(0,10)
but this changing this keeps the height the same and changes only the range to which y can go, while want to change visually the height of the track on the graph.
Any help would be great.
Dan