Genome region annotation

Question

[Pappu]

I am wondering which tool is good for annotating human genome regions like Genes, Promoters etc which takes into account overlapping genes.

[Fatima]

Here is a list of gene prediction softwares: https://en.wikipedia.org/wiki/List_of_gene_prediction_software

[lieven.sterck]

also this post contains a link to a maintained list of genome annotation tools: List of genome annotation tools (>140)

why overlapping genes btw. Don't think human genome has such genes?