bcbio-nextgen external resources/downloads
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4.0 years ago
astropan • 0

Is there a list of URL's for all the tools/databases that bcbio-nextgen uses? We are recently put inside a firewall and need to manually whitelist each URL for accessing them. I would think one of the configuration files would have a list of source URLs for the tools and databases used by bcbio-nextgen, but can't find it.

bcbio-nextgen firewall restrictions whitelisting • 587 views
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need to manually whitelist each URL for accessing them

That is pretty onerous. Looks like bcbio is getting all tools via conda/mamba/pip (see this script).

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