findPeaks in homer

0

Entering edit mode

4.0 years ago

mohamadrezakeshtkar • 0

I'm a computer engineer and not very familiar with the Homer tool, I studied homer but I do not know what causes the low error?

findPeaks Sox2-ChIP-Seq  -style factor -o auto
error-->findPeaks: command not found

ChIP-Seq homer findPeaks • 1.8k views

ADD COMMENT • link updated 4.0 years ago by Ram 44k • written 4.0 years ago by mohamadrezakeshtkar • 0

0

Entering edit mode

Please be more careful while creating posts - this is a Question type post and not a Tool type post. I've made the necessary change this time. Read: How to Use Biostars, Part II: Post types, Deleting, (Un)Subscribing, Linking and Bookmarking

ADD REPLY • link 4.0 years ago by Ram 44k

0

Entering edit mode

Yes you are right Do you have an idea to answer my question?

ADD REPLY • link 4.0 years ago by mohamadrezakeshtkar • 0

0

Entering edit mode

You probably don't have the executable/binary in your PATH. What platform (OS) are you on?

ADD REPLY • link 4.0 years ago by Ram 44k

0

Entering edit mode

ubuntu19

ADD REPLY • link 4.0 years ago by mohamadrezakeshtkar • 0

0

Entering edit mode

And how did you install homer? Using apt-get/a similar package manager or from source?

ADD REPLY • link 4.0 years ago by Ram 44k

0

Entering edit mode

apt-get

ADD REPLY • link 4.0 years ago by mohamadrezakeshtkar • 0

0

Entering edit mode

That's odd - apt-get install should take care of PATH settings. Did the package install successfully? Can you give us the command you used? Maybe run it again and give us all the output (STDOUT & STDERR) you see.

ADD REPLY • link 4.0 years ago by Ram 44k

0

Entering edit mode

Now I was able to solve the above problem with your guidance. I did not add the executable path correctly.

Thank you very much.

ADD REPLY • link 4.0 years ago by mohamadrezakeshtkar • 0

Login before adding your answer.