Question

Package to get full Pubmed text in R

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4.0 years ago

Bioinformatician_in_trouble ▴ 30

Hello, Does anyone know of any package in R that contains a function to extract full Pubmed text? I searched in RISmed, pubmed.mineR, and easyPubMed, I believe none of them can extract full text. Any leads would be highly appreciated.

R data mining Pubmed • 1.6k views

ADD COMMENT • link updated 4.0 years ago by Jean-Karim Heriche 27k • written 4.0 years ago by Bioinformatician_in_trouble ▴ 30

score 1 · Answer 1 · 2020-11-25

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Entering edit mode

4.0 years ago

Jean-Karim Heriche 27k

PubMed only has abstracts. Only open access articles have full text available and these are in PubMed Central. You can use the NCBI's eutils to get them or download them from their FTP site.

ADD COMMENT • link 4.0 years ago by Jean-Karim Heriche 27k