SV detect method based on genome assemble

Question

[leeunfeng]

i have tho close species genome, i want to know the SV detect method based on genome assemble

[samuel.a.odonnell]

Are you asking for SV detection based on whole genome alignment? I.e. your new assembly versus this "close species genome"? Two tools that consider a range of SV's include MUM&Co and syri

You might want to rewrite your question to be more clear