Entering edit mode
4.0 years ago
huynguyen96.dnu
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50
Hello,
Initially, I have had a vcf file, then used PLINK to turn it into three plink binary files (i.e., BIM, FAM, and BED).
Next, for FAM file, I only preserved samples of my interest using R (from 504 samples, now I just have 503 samples).
The same for BIM file, I only kept variant IDs of my interest using R too (from about 3 mil. IDs, now just have 18 IDs).'
Right now, I dunno how to have a new BED file accompanied with two new files FAM and BIM.
Please help me. Thanks in advance
