Entering edit mode
4.0 years ago
lorenzinip
•
0
Hi, I have a list of UCSC IDs in this format inside a txdb object in the TX_NAME column:
TX_NAME
uc001aaa.3
uc001aal.1
uc001aau.3
uc010nxu.2
uc001abp.2
How do I convert them with the org.Hs.eg.db database to gene symbol:
TX_NAME GENE_SYMBOL
uc001aaa.3 DDX11L1
uc001aal.1 OR4F5
uc001aau.3 LOC100132062
uc010nxu.2 ...
uc001abp.2 ...
There are many solutions, if you just search for keywords:
UCSC
to
gene
symbol