TopGO results inconclusive
0
0
Entering edit mode
4.0 years ago
zebratown • 0

Hi, I just performed a GO terms enrichment analysis of the genes I found they have the highest CNV.

But my top 3 enriched go results are

  1. biological_process
  2. metabolic process
  3. cellular process

I used the following code to generate the results.

sampleGOdata <- new("topGOdata",
                        description = "Simple session", ontology = "BP",
                        allGenes = geneList, geneSelectionFun(allGenes),
                        nodeSize = 10, 
                        annot = annFUN.gene2GO, gene2GO=geneID2GO)

Shouldn't the results be more specific than that?

Best! Thanks

TopGo R GO Annotation enrichment • 623 views
ADD COMMENT

Login before adding your answer.

Traffic: 2608 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6