Extract gene Name, ID, and description from gff3 file
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4.0 years ago
akibio • 0

I want to extract the every gene's Name, ID (locus tag), and description from the following gff3 file

image https://ibb.co/pwDhBZX

Can anyone help me out or recommend me some software? Cheers

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  1. What have you tried?
  2. Please see How to add images to a Biostars post to add your images properly. You need the direct link to the image or the HTML embed code, not the link to the webpage that has the image embedded (which is what you have used here)
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Well I've tried using gffreads to convert to gtf. But I can't seem to get the command correct to keep the info I want. I'm only able to get the gene ID out.

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You should be able to perform this task with a tool from AGAT

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