Phasing haplotypes from genetic trios

Question

[heskett]

Hi all,

I am wondering if there is a tutorial or well documented pipeline anywhere to perform haplotype phasing of a genetic trio where we start with short read whole genome sequencing of two parents and one child. I know that this may be possible with SHAPEIT, EAGLE, or BEAGLE, but I can't find good documentation or confirm that this is possible with these tools. Thank you!

Best regards,

Michael Pre-Doctoral Fellow National Cancer Institute National Institute of Health, USA