Determining breakpoint size in cnvnator-lumpy pipeline

Question

[nitinra]

Hello all,

I am trying to pipe the results from CNVnator to lumpy using the cnvnator_to_bedpes.py (lumpy git code)

I am not sure how to determine the breakpoint size for the input. How do I determine the breakpoint size? Is it the same as the bin size used during cnvnator CNV calling?

Thank you.