Plotting the results (p-values) from various conditional GWAS

Question

[sam.far.7]

Hi, I am interested in presenting the various p-values for top SNPs resulted from different GWAS in one plot in order to show the common SNPs or differences in the results. Any suggestions for the type of plot?

Answer 1

[tothepoint]

I believe there are different ways to represent significant results but I found circos in highlighting region of interest as one of the most interactive way as well as Manhattan plot for the same. I found these particular tools with well documented example and help forum to proceed in my work.

Circos

CMplot