TCGA Copy Number Data in Rdata format

Question

[Kasthuri]

Hi,

I am working with clonality analysis software in which one of the arguments is seg.mat.loc="tcga.blca.seg.hg19.rdata"

It is segmented TCGA copy number data but in R format. The package is not so clear in explaining where it could be found.

Here is the package info: https://bitbucket.org/nmcgranahan/pancancerclonality/src

Any chance someone knows about this?

Thanks Kasthuri

[zhoujun.nmu]

Hello,

Recently I am also working with clonality analysis and learned about the EstimateClonality package. I also have questions about that file and have you understood about that?

And I want to know whether it means that it just adapt to the analysis of TCGA?

Thanks !

Joson

Answer 1

[Kevin Blighe]

Hello,

I work with Dr. McGranahan, but I did not have to ask him personally about your question in this case.

The Rdata file is in the ZIP file, from here: https://bitbucket.org/nmcgranahan/pancancerclonality/downloads/

Kevin

[Kasthuri]

Thanks Kevin. Actually I am working with pancreas TCGA and could see several other cancers except that. It will be great if I could have that.

Best K.