how to run torrent variant caller on command line ?

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3.9 years ago

Nobody ▴ 30

Hi community ! i will to work with TVC for Variant Calling...do you know how i can run it on command line on ubuntu. i already downloaded it by : sudo apt get-install tvc

thank you.

next-gen SNP genome • 1.3k views

ADD COMMENT • link 3.9 years ago by Nobody ▴ 30

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do you know how i can run it on command line on ubuntu

yes.

http://updates.iontorrent.com/tvc_standalone/README.txt

ADD REPLY • link 3.9 years ago by Pierre Lindenbaum 164k

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thank you so much ! do you know what is that : --region-bed and --primer-trim

ADD REPLY • link 3.9 years ago by Nobody ▴ 30

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And i don't really understand how to install it because i used only "sudo apt get-install tvc "

ADD REPLY • link 3.9 years ago by Nobody ▴ 30

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The software installation procedure is already mentioned in the documentation.

ADD REPLY • link 3.9 years ago by Arup Ghosh 3.2k

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