Question

What do R, Y, S, G... values mean in genotype column of output of VarScan?

1

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3.9 years ago

biom.andressa ▴ 10

Hi,

Do you know what these letters like R, Y, S, G... (in genotype column) mean in output file from VarScan? Or do I always need to generate a VCF file if I want to know the genotype in that position for tumour and normal samples?

VarScan NGS SNP • 780 views

ADD COMMENT • link updated 3.9 years ago by zx8754 12k • written 3.9 years ago by biom.andressa ▴ 10

score 3 · Accepted Answer · 2021-01-14

3

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3.9 years ago

Pierre Lindenbaum 164k

degenerate notation ?

ADD COMMENT • link 3.9 years ago by Pierre Lindenbaum 164k