Location of the peaks from CHIP-seq data in the genome

Question

[ja4123]

Hey! I have CHip-seq data from two experiments. I have created bam files frist, then using macs3 I've made .bed and .narrowPeak. I need to examine the location (introns, exons, promoters, centromers and so on) and the number of peaks in genome. Can someone suggest the tool for that? Kindly help.

Answer 1

[GK1610]

chipseeker

http://bioconductor.org/packages/devel/bioc/vignettes/ChIPseeker/inst/doc/ChIPseeker.html