Error in extracting SRA file: symbol lookup error

Question

[marongiu.luigi]

Hello

I am trying to extract fastq files from SRA files. I used the remote command

fastq-dump  --split-files SRR9649373

and also manually downloaded the SRA file and then ran the local command

fastq-dump -I  --split-files SRR9649373.1

but in both cases I get the error:

fastq-dump: symbol lookup error: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so.2: undefined symbol: vdb_mbedtls_md_setup

What would be the problem?

Thank you

Answer 1

[marongiu.luigi]

Does not matter. I reinstalled all SRAtoolkit and now it works... case closed.