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3.9 years ago
BlastedBadger
▴
160
I want to input an alignment (fasta format) for Beast2, but having to rewrite the entire data (8 million sites) into the XML file seems like a waste of space. Does anyone know if there is a syntax that would allow inputting the alignment from an external file?
As an example, I have the following files:
alignment.fasta # 167M (20 species, 8,718,120 nucleotide sites)
beast_dating_parameters.xml # 170M
At the moment, I create the xml from a template using beastgen
.