In methylation sequencing, what does BedGraph value stand for?
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3.8 years ago
kwanghoon ▴ 20

I have Methylation capture seq data like BedGraph.

BedGraph is called using Bismark tool.

I can see 4 column of this file. First column is chromosome, second is start site, third is end site. fourth is values.

Does this value stand for methylation value? Like beta value of methylation array?

Thank you.

bedgraph methylaion methylation sequencing bismark • 842 views
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Fourth column belongs to probability scores (Methylation value) for the given position at specific chromosome.

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Thank you devarora. Then it looks like similar as beta value.

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