Hello
I have an expression set from Rat GSE43700
I am trying to annotate the probs but I get this error
> columns(hgu133plus2.db) # Features retrievable by AnnotationDbi::select
[1] "ACCNUM" "ALIAS" "ENSEMBL" "ENSEMBLPROT" "ENSEMBLTRANS"
[6] "ENTREZID" "ENZYME" "EVIDENCE" "EVIDENCEALL" "GENENAME"
[11] "GO" "GOALL" "IPI" "MAP" "OMIM"
[16] "ONTOLOGY" "ONTOLOGYALL" "PATH" "PFAM" "PMID"
[21] "PROBEID" "PROSITE" "REFSEQ" "SYMBOL" "UCSCKG"
[26] "UNIGENE" "UNIPROT"
> anno_filt_eset2 <- AnnotationDbi::select(hgu133plus2.db, keys = (featureNames(filt_eset2)), columns = c("SYMBOL", "GENENAME", "ENTREZID"), keytype = "PROBEID")
Error in .testForValidKeys(x, keys, keytype, fks) :
None of the keys entered are valid keys for 'PROBEID'. Please use the keys method to see a listing of valid arguments.
>
Any help please?
See the answer of James on Bioconductor: