Download entire human rRNA sequences

Question

[bioinformatics.queries]

Hello everyone

Does anyone know where and how could I download entire human rRNA unit?

Thank you so much

[seidel]

Do you mean a description of an rRNA unit that you can look up at Ensembl, or UCSC, or NCBI? Or do you mean an actual sequence, including all repeats, that someone might get and assemble from a long read sequencing technology?

[bioinformatics.queries]

I need to filter the rRNA contamination from my RNA-seq data. Could you please share the link to download rRNA from Ensemble or NCBI. I know the following link rDNA but it included rDNA repeats.

[GenoMax]

That is the entire sequence of human rDNA repeat. You can search against just this copy. See more: A: how can i download human ribosomal reference ?

[DareDevil]

This link may help you. Also, look at this paper

[bioinformatics.queries]

Thank you so much. I was able to download from the ensemble.

[DareDevil]

You can upvote the answer, if that helped you.