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3.6 years ago
taniamahmood38
▴
60
Hii, I am using Selscan for XPEHH, iHS analysis. For these tests, a genetic recombination map tsv file with four columns: (Chromosome, Position(bp), Rate(cM/Mb), Map(cM)) is required. Currently, i have a BAM file and a VCF file. If anyone please sort out how can i convert either my BAM or my VCF file into the required file format. Please guide.
Thanks in advance!
You should be able to download more or less the right thing from here http://bochet.gcc.biostat.washington.edu/beagle/genetic_maps/
Many thanks for helping. This is the perfect file i want but i require GeneMap file of Goat (Capra hircus) instead of human. Is it possible to get that one for goat ? Sorry to trouble but this link contains the GeneMap file for human only.
Ah right. I will have a look - but if you want to search, I would suggest looking for either 'goat genetic map' or 'goat recombination map'.
Sure, thank you so much.