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3.8 years ago
bandanaschapagain
▴
40
Hi, I am trying to analyse my mitochondrial data set. As mitochondria are heteroplasmic and haploid, while using bcftools how can I specify both? Earlier I used the command to call the variants to my bcf file created my using bcftools mpileup
bcftools call --ploidy 1 -m -v -o my_input_raw.bcf
I tried to look around and found other software but I did not come across any specific parameter with bcftools.
Thank you in advance.
I highly appreciate any suggestion at this point.