bcftools parameter to define mitochondrial heteroplasmy and haploid condition.
0
0
Entering edit mode
3.8 years ago

Hi, I am trying to analyse my mitochondrial data set. As mitochondria are heteroplasmic and haploid, while using bcftools how can I specify both? Earlier I used the command to call the variants to my bcf file created my using bcftools mpileup

bcftools call --ploidy 1 -m -v -o my_input_raw.bcf

I tried to look around and found other software but I did not come across any specific parameter with bcftools.

Thank you in advance.

SNP RNA-Seq sequencing snp assembly • 1.1k views
ADD COMMENT
0
Entering edit mode

I highly appreciate any suggestion at this point.

ADD REPLY

Login before adding your answer.

Traffic: 1658 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6