Entering edit mode
3.8 years ago
szp770
▴
10
Hi, all. Now I have a interaction file like this: the last column shows the read counts
chr8 10000 15000 chr8 10000 15000 3
chr8 20000 25000 chr8 20000 25000 4
chr8 25000 30000 chr8 25000 30000 5
chr8 35000 40000 chr8 35000 40000 1
chr8 40000 45000 chr8 40000 45000 4
chr8 45000 50000 chr8 45000 50000 1
Now I want to use python to create a matrix like this:
chr8-10000 chr8-15000 chr8-20000 chr8-25000 chr8-30000 chr8-35000 chr8-
40000 chr8-50000
chr8-10000
chr8-15000
chr8-20000
chr8-25000
chr8-30000
chr8-35000
chr8-40000
chr8-50000
And finally, I can fill this table according to the read counts from the interaction file. and for the NA values to fill 0.
How to finish all the things in python. Thanks!