How to parse Newick into line format?
1
0
Entering edit mode
9.6 years ago
seb85il • 0

If I have a Newick tree file with custom values for branches, how can I parse it into line output, similar to that produced by some Phylip programs:

Between        And            Length
-------        ---            ------
   3             2            0.97597
   2             1            0.39020

And so on for the whole tree

tree-parsing alignment sequence • 2.8k views
ADD COMMENT
0
Entering edit mode

Hi, this was a long time ago, but I have the same question. Did you ever figure it out?

ADD REPLY
0
Entering edit mode
3.8 years ago
seb85il • 0

Eventually I just ended up making a custom script that breaks it down, using parentheses as a separator...

ADD COMMENT

Login before adding your answer.

Traffic: 2082 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6