compare two assembly genomes

Question

[gallinaro.martina]

Hi everybody! I wold like to compare two assembled genomes, in order to find common regions and regions private to each assembly. Anyone has some advice on how I can compare the two assembled genomes? Which software I can use?

thank you all

Answer 1

[MSRS]

BPGA is a good option to find out the bacterial genomic comparison. In this regard, the genebank file format needed.