Question

Tumor and matched normal data

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3.8 years ago

shivangi.agarwal800 ▴ 120

Hi,

How can I fetch tumor and matched normal data from SRA toolkit? Please suggest.

wes wgs • 654 views

ADD COMMENT • link updated 3.8 years ago by GenoMax 147k • written 3.8 years ago by shivangi.agarwal800 ▴ 120

score 0 · Answer 1 · 2021-02-20

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3.8 years ago

GenoMax 147k

Use sra-explorer (LINK) with right keywords. Get links to download data from results. Use directions included in: sra-explorer : find SRA and FastQ download URLs in a couple of clicks

ADD COMMENT • link 3.8 years ago by GenoMax 147k

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Ya, Thanks. SRA-explorer making the things convenient. But let's say if I want to download 100 breast tumor samples of different tumor stages and their matched normal. Then, How should I go and get the accession id to download it using SRA-explorer?

ADD REPLY • link 3.8 years ago by shivangi.agarwal800 ▴ 120