Entering edit mode
7.7 years ago
Bioinfonext
▴
470
I have done genome guided assembly using StringTie. In the output fasta header contain: Isoform name and then gene name.
I want extract longest sequence based on gene name.
fasta file header:
STRG.3.1 gene=STRG.3
TCTCATTATT
STRG.3.2 gene=STRG.3
TCTCATTATTGTCTT
Both isoforms belongs to same gene STRG3.
I want to extract the longest isofrom.
Thanks
Please search Biostars (using a google search). It will save you having to ask these types of questions: How to extract the longest isoform from multi fasta file
I don't think this said link solved the problem based on some feedback I have seen on it