I want to create a box plot for RNA-Seq data, but i am new to R, so i don't know, how to perform this task

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3.8 years ago

rishav513 ▴ 30

This is the link

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE94660

and this is the GSE94660_RPKM_normalized.txt.gz file for which i want to create box plot in R, but i don't know, how to create a box plot for this data. Please help me out.

RNA-Seq R • 803 views

ADD COMMENT • link 3.8 years ago by rishav513 ▴ 30

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Do you know how to make a plot of anything in R? For instance: plot(1,1)? For this question, you simply need to learn some basic R procedures. If you uncompress the file, you'll have to figure out how to read a file into R so that it's a dataframe. And then use the boxplot function to plot your dataframe: boxplot(dataframe). It will plot each column in the boxplot. But this is not the place to learn basic R syntax. There are many resources available for learning this elsewhere.

ADD REPLY • link 3.8 years ago by seidel 11k

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