I have performed single-cell experiment containing 3 Ctrl and 3 treatment (T) samples and I used Seurat integration vignette for comparing Ctrl and T conditions. I use AverageExpression function to get the expression values of genes in Ctrl and T samples in various clusters. However AverageExpression displays the combined expression values of all Ctrl and T samples for each cluster.
I want to determine the individual expression values of genes separately for each samples of Ctrl and T (from integrated Seurat object). I am wondering how can I get individual expression values
Something like this:
Cluster 1
--------------Ctrl1--------- Ctrl2---------Ctrl3-------T1----------T2----------T3
GAPDH----10------------15 ----------13--------- 5-------------17------------9
ACTB------10------------15 ----------13--------- 5-------------17------------9
Cluster 2
-------------Ctrl1--------- Ctrl2---------Ctrl3-------T1----------T2----------T3
GAPDH----10------------15 ----------13--------- 5-------------17------------9
ACTB------10------------15 ----------13--------- 5-------------17------------9
Is it possible to get this info from integrated data?
Thank you
