What are the best scATAC-seq computational pipelines / tools / literature currently available?

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3.8 years ago

Sergio Martínez Cuesta ▴ 230

I hope everyone is doing well,

What is your scATAC-seq computational pipeline / tool / literature of best choice? I wanted to take a poll for which scATAC-seq tools in the public or proprietary domains people are currently being used.

We are expanding our capabilities in single-cell chromatin analysis and we are aiming for a good start. Any inputs or who I should get in touch would be much appreciated.

Thanks!

single-cell scATAC-seq ATAC-seq pipeline • 1.7k views

ADD COMMENT • link 3.8 years ago by Sergio Martínez Cuesta ▴ 230

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Hi, this is from yesterday : "ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis" https://www.nature.com/articles/s41588-021-00790-6

ADD REPLY • link 3.8 years ago by lessismore ★ 1.4k

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