determine the robustness of single-cell clusters

Question

[Maria17]

Hi All,

I'm working on single-cell RNA seq data mostly with the Seurat package. I need to assess cluster stability and determine the robustness of single-cell clusters but I could not find that many tools for this purpose.

Any recommendation and tools in R (preferably applicable for Seurat object or Sce object) would be appreciated. Thanks.

Maria

Answer 1

[fracarb8]

scclusteval (https://github.com/crazyhottommy/scclusteval) does exactly that.