getting fastq ID with SNPs

Question

[bitpir]

Hi! I was wondering if anyone knows how to bioinformatically get fastqID with mutations? I want to extract the info that was displayed in Genome browser, fastqID that has SNP compared to reference.

Thanks for the help!

something like this

[GenoMax]

Do you want to do that programmatically or just for a few ID's?

[bitpir]

Programmatically. I just need the readname and the nucleotide that it is calling at a particular coordinate.