Downloading 1000genome phase 3 data in 38 build

Question

[AVA]

I am new to the field of genomics. I would like to perform a PCA using 1K data. My data is in 38 build and therefore, I would like to download 1K phase 3 data in 38 build from the site below:

http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/supporting/GRCh38_positions/

I have no clue how I can download files for all chromosomes using one command because merged data is not available in 38 build (as for build 37 ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/release/20100804/ALL.2of4intersection.20100804.genotypes.vcf.gz) or I have missed it.

[MatthewP]

I download from ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/1000_genomes_project/release/20190312_biallelic_SNV_and_INDEL/
a few months ago, but it's 404 now?

[enes]

I'm not sure if it will help you but I used the gatk bundle for this.You can access here

Answer 1

[nareshmvr]

wget https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/gambian_genome_variation_project/release/20200217_biallelic_SNV/ALL_GGVP.chr{{1..22},X}.shapeit2_integrated_snvindels_v1b_20200120.GRCh38.phased.vcf.gz{,.tbi}

This worked