Many of the proteins of P.falciparum's are not annotated, so it is difficult to see if a particular protein is a kinase rather than another protein type. I used Panther Classes to get some data, but many of the Protein ID I gave to it are returned unclassified and I feel my analysis is a bit poor of significance. Therefore, I was wondering if there is any tool to predict what kind of protein I am dealing with (hopefully not to be paid). I thought about a strategy, like finding the orthologues by blast in another well annotated organism , taking these names and then infer. However prior to do this I would like to know if there is something more reliable. Thank you in advance
Second everything Mensur has said - those proteins are not annotated for a good reason. HHPred is as good a tool as I have found for dealing with unknown proteins, but it is indeed (or at least was) hard to install.
I have some tips here if you do plan to install it, but they are somewhat out of date now just FYI. A: HHpred batch submission