Entering edit mode
3.7 years ago
akshitiz09
▴
10
Hi everyone,
I have some WGS data for humans to process and I'm using gatk for CNV calling. [https://gatk.broadinstitute.org/hc/en-us/articles/360035531152--How-to-Call-common-and-rare-germline-copy-number-variant] I'm running DetermineGermlineContigPloidy in CASE MODE. I have one file that needs to be processed. How do I generate contig-ploidy model files to use this tool?
Thank you
