Entering edit mode
3.8 years ago
Guilherme
▴
40
I'm trying to phase 63 samples with 562251 SNPs genotyped. I'm getting an error but I'm not quite sure about what it's actually the error and how can I circumvent this...
I get this error:
Your upload data contains 562251 SNPs in 5 chunks. Input genotypes are expected to come from array genotypes with no more than 20000 SNPs expected per chunk.
So according with the error the chunks have more than 20k markers...How can I fix this? Subset the chr22 vcf in different chr22 vcf files with less markers? If so, how can I merge them later without messing the phase?
Below the TopMed error
