Help me solve this error in bigSCale2
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3.7 years ago

I'm getting the following error while running bigSCale with a dataset of 50 cells and 6000 genes. How to solve this?

Error in .check_tsne_params(nrow(X), dims = dims, perplexity = perplexity,  : 
  perplexity is too large for the number of samples.
bigSCale2 scRNAseq • 750 views
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dhanesh01998

Please modify the post title to something informative. "Help me solve this error in bigSCale2" does not help understand the issue.

Elaborate on what are you trying to achieve, what was the command you ran.

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