Identifiying SNP frequencies for very specific subpopulations on dbSNP
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3.7 years ago
Michael ▴ 270

For a specific area on the human genome I have to identify if/which SNPs differ between European and Japanese individuals.

I already identified the SNPs along with the identifiers on dbSNP.

Is there a good way to extract the SNPs frequencies exactly for groups "European" and "Japanese". How do I identify only SNPs from Japanese individuals?


EDIT: ANYONE an idea where I can get the raw data for this? Or does this not exist?

SNP • 648 views
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Have you looked at VEP annotation tool? It has allele frequencies by super-populations, I am not sure if you can just find Japanese.

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No, that does not help. but thanks!

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