Entering edit mode
3.8 years ago
Michael
▴
270
For a specific area on the human genome I have to identify if/which SNPs differ between European and Japanese individuals.
I already identified the SNPs along with the identifiers on dbSNP.
Is there a good way to extract the SNPs frequencies exactly for groups "European" and "Japanese". How do I identify only SNPs from Japanese individuals?
EDIT: ANYONE an idea where I can get the raw data for this? Or does this not exist?
Have you looked at VEP annotation tool? It has allele frequencies by super-populations, I am not sure if you can just find Japanese.
No, that does not help. but thanks!