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3.8 years ago
moutazhatem.mh
•
0
I have recently downloaded microarray data from GEO using the following in R (as mentioned in GEO2R)
library(GEOquery)
library(limma)
library(umap)
gset <- getGEO("GSE86971", GSEMatrix =TRUE, getGPL=FALSE)
if (length(gset) > 1) idx <- grep("GPL13684", attr(gset, "names")) else idx <- 1
gset <- gset[[idx]]
ex <- exprs(gset)
the resulted contained row names
mMC002640 , mMC002644 , mMC002645, PH_mM_0000001 , and PH_mM_0000002
The question here is what are the type of identifiers ( for example mMC002640, PH_mM_0000001 ) used for this data? and how can convert those into gene names?
@Kevin's answer: A: Annotate Affymetrix probesets to Gene symbols