How can I convert mouse microarray's Probe IDs into gene names?
0
0
Entering edit mode
3.8 years ago

I have recently downloaded microarray data from GEO using the following in R (as mentioned in GEO2R)

library(GEOquery)
library(limma)
library(umap)
gset <- getGEO("GSE86971", GSEMatrix =TRUE, getGPL=FALSE)
if (length(gset) > 1) idx <- grep("GPL13684", attr(gset, "names")) else idx <- 1
gset <- gset[[idx]]
ex <- exprs(gset)

the resulted contained row names

mMC002640 , mMC002644 , mMC002645, PH_mM_0000001 , and PH_mM_0000002

The question here is what are the type of identifiers ( for example mMC002640, PH_mM_0000001 ) used for this data? and how can convert those into gene names?

R next-gen gene • 635 views
ADD COMMENT
0
Entering edit mode
ADD REPLY

Login before adding your answer.

Traffic: 2729 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6